Biocomputing Publications

Title Authors Journal Year of Publication DOI Pubmed ID
Title
A mutation in Nischarin causes otitis media via LIMK1 and NF-kappaB pathways
Authors
M. Crompton, T. Purnell, H.E. Tyrer, A. Parker, G. Ball, R.E. Hardisty-Hughes, R. Gale, D. Williams, C.H. Dean, M.M. Simon, A.M. Mallon, S. Wells, M.F. Bhutta, M.J. Burton, H. Tateossian, S.D.M. Brown
Journal
PLoS Genet
Year
2017
DOI
10.1371/journal.pgen.1006969
Pubmed ID
PMC5570507
Title
Prevalence of sexual dimorphism in mammalian phenotypic traits
Authors
N.A. Karp, J. Mason, A.L. Beaudet, Y. Benjamini, L. Bower, R.E. Braun, S.D.M. Brown, E.J. Chesler, M.E. Dickinson, A.M. Flenniken, H. Fuchs, M.H. Angelis, X. Gao, S. Guo, S. Greenaway, R. Heller, Y. Herault, M.J. Justice, N. Kurbatova, C.J. Lelliott, K.C.K. Lloyd, A.M. Mallon, J.E. Mank, H. Masuya, C. McKerlie, T.F. Meehan, R.F. Mott, S.A. Murray, H. Parkinson, R. Ramirez-Solis, L. Santos, J.R. Seavitt, D. Smedley, T. Sorg, A.O. Speak, K.P. Steel, K.L. Svenson, S. Wakana, D. West, S. Wells, H. Westerberg, S. Yaacoby, J.K. White
Journal
Nat Commun
Year
2017
DOI
10.1038/ncomms15475
Pubmed ID
PMC5490203
Title
Addressing reproducibility in single-laboratory phenotyping experiments
Authors
N. Kafkafi, I. Golani, I. Jaljuli, H. Morgan, T. Sarig, H. Wurbel, S. Yaacoby, Y. Benjamini
Journal
Nat Methods
Year
2017
DOI
10.1038/nmeth.4259
Pubmed ID
PMC5490203
Title
Disease model discovery from 3,328 gene knockouts by The International Mouse Phenotyping Consortium
Authors
T.F. Meehan, N. Conte, D.B. West, J.O. Jacobsen, J. Mason, J. Warren, C.K. Chen, I. Tudose, M. Relac, P. Matthews, N. Karp, L. Santos, T. Fiegel, N. Ring, H. Westerberg, S. Greenaway, D. Sneddon, H. Morgan, G.F. Codner, M.E. Stewart, J. Brown, N. Horner, M. Haendel, N. Washington, C.J. Mungall, C.L. Reynolds, J. Gallegos, V. Gailus-Durner, T. Sorg, G. Pavlovic, L.R. Bower, M. Moore, I. Morse, X. Gao, G.P. Tocchini-Valentini, Y. Obata, S.Y. Cho, J.K. Seong, J. Seavitt, A.L. Beaudet, M.E. Dickinson, Y. Herault, W. Wurst, M.H. de Angelis, K.C.K. Lloyd, A.M. Flenniken, L.M.J. Nutter, S. Newbigging, C. McKerlie, M.J. Justice, S.A. Murray, K.L. Svenson, R.E. Braun, J.K. White, A. Bradley, P. Flicek, S. Wells, W.C. Skarnes, D.J. Adams, H. Parkinson, A.M. Mallon, S.D.M. Brown, D. Smedley
Journal
Nat Genet
Year
2017
DOI
10.1038/ng.3901
Pubmed ID
PMC5546242
Title
Disruption of the homeodomain transcription factor orthopedia homeobox (Otp) is associated with obesity and anxiety
Authors
L. Moir, E.G. Bochukova, R. Dumbell, G. Banks, R.S. Bains, P.M. Nolan, C. Scudamore, M. Simon, K.A. Watson, J. Keogh, E. Henning, A. Hendricks, S. O'Rahilly, I. Barroso, U.K.10K. consortium, A.E. Sullivan, D.C. Bersten, M.L. Whitelaw, S. Kirsch, E. Bentley, I.S. Farooqi, R.D. Cox
Journal
Mol Metabol
Year
2017
DOI
http://dx.doi.org/10.1016/j.molmet.2017.08.006
Pubmed ID
PMC5681237
Title
High-throughput discovery of novel developmental phenotypes
Authors
M.E. Dickinson, A.M. Flenniken, X. Ji, L. Teboul, M.D. Wong, J.K. White, T.F. Meehan, W.J. Weninger, H. Westerberg, H. Adissu, C.N. Baker, L. Bower, J.M. Brown, L.B. Caddle, F. Chiani, D. Clary, J. Cleak, M.J. Daly, J.M. Denegre, B. Doe, M.E. Dolan, S.M. Edie, H. Fuchs, V. Gailus-Durner, A. Galli, A. Gambadoro, J. Gallegos, S. Guo, N.R. Horner, C.W. Hsu, S.J. Johnson, S. Kalaga, L.C. Keith, L. Lanoue, T.N. Lawson, M. Lek, M. Mark, S. Marschall, J. Mason, M.L. McElwee, S. Newbigging, L.M. Nutter, K.A. Peterson, R. Ramirez-Solis, D.J. Rowland, E. Ryder, K.E. Samocha, J.R. Seavitt, M. Selloum, Z. Szoke-Kovacs, M. Tamura, A.G. Trainor, I. Tudose, S. Wakana, J. Warren, O. Wendling, D.B. West, L. Wong, A. Yoshiki, D.G. MacArthur, G.P. Tocchini-Valentini, X. Gao, P. Flicek, A. Bradley, W.C. Skarnes, M.J. Justice, H.E. Parkinson, M. Moore, S. Wells, R.E. Braun, K.L. Svenson, M.H. de Angelis, Y. Herault, T. Mohun, A.M. Mallon, R.M. Henkelman, S.D. Brown, D.J. Adams, K.C. Lloyd, C. McKerlie, A.L. Beaudet, M. Bucan, S.A. Murray
Journal
Nature
Year
2016
DOI
10.1038/nature19356
Pubmed ID
PMC5295821
Title
Analysis of Individual Mouse Activity in Group Housed Animals of Different Inbred Strains using a Novel Automated Home Cage Analysis System
Authors
R.S. Bains, H.L. Cater, R.R. Sillito, A. Chartsias, D. Sneddon, D. Concas, P. Keskivali-Bond, T.C. Lukins, S. Wells, A. Arozena, P.M. Nolan, J.D. Armstrong
Journal
Front Behav Neurosci
Year
2016
DOI
10.3389/fnbeh.2016.00106
Pubmed ID
PMC4901040
Title
The Zfhx3-Mediated Axis Regulates Sleep and Interval Timing in Mice
Authors
E. Balzani, G. Lassi, S. Maggi, S. Sethi, M.J. Parsons, M. Simon, P.M. Nolan, V. Tucci
Journal
Cell Rep
Year
2016
DOI
10.1016/j.celrep.2016.06.017
Pubmed ID
PMC5991551
Title
A bioimage informatics platform for high-throughput embryo phenotyping
Authors
J.M. Brown, N.R. Horner, T.N. Lawson, T. Fiegel, S. Greenaway, H. Morgan, N. Ring, L. Santos, D. Sneddon, L. Teboul, J. Vibert, G. Yaikhom, H. Westerberg, A.M. Mallon
Journal
Brief Bioinform
Year
2016
DOI
10.1093/bib/bbw101
Pubmed ID
PMC5862285
Title
A SLM2 Feedback Pathway Controls Cortical Network Activity and Mouse Behavior
Authors
I. Ehrmann, M.R. Gazzara, V. Pagliarini, C. Dalgliesh, M. Kheirollahi-Chadegani, Y. Xu, E. Cesari, M. Danilenko, M. Maclennan, K. Lowdon, T. Vogel, P. Keskivali-Bond, S. Wells, H. Cater, P. Fort, M. Santibanez-Koref, S. Middei, C. Sette, G.J. Clowry, Y. Barash, M.O. Cunningham, D.J. Elliott
Journal
Cell Rep
Year
2016
DOI
10.1016/j.celrep.2016.12.002
Pubmed ID
PMC5199341
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