Biocomputing Publications

Title Authors Journal Year of Publication DOI Pubmed ID
Title
The digital revolution in phenotyping
Authors
A. Oellrich, N. Collier, T. Groza, D. Rebholz-Schuhmann, N. Shah, O. Bodenreider, M.R. Boland, I. Georgiev, H. Liu, K. Livingston, A. Luna, A.M. Mallon, P. Manda, P.N. Robinson, G. Rustici, M. Simon, L. Wang, R. Winnenburg, M. Dumontier
Journal
Brief Bioinform
Year
2016
DOI
10.1093/bib/bbv083
Pubmed ID
PMC5036847
Title
Correction of the auditory phenotype in C57BL/6N mice via CRISPR/Cas9-mediated homology directed repair
Authors
J. Mianne, L. Chessum, S. Kumar, C. Aguilar, G. Codner, M. Hutchison, A. Parker, A.M. Mallon, S. Wells, M.M. Simon, L. Teboul, S.D. Brown, M.R. Bowl
Journal
Genome Med
Year
2016
DOI
10.1186/s13073-016-0273-4
Pubmed ID
Pmc4753642
Title
Novel gene function revealed by mouse mutagenesis screens for models of age-related disease
Authors
P.K. Potter, M.R. Bowl, P. Jeyarajan, L. Wisby, A. Blease, M.E. Goldsworthy, M.M. Simon, S. Greenaway, V. Michel, A. Barnard, C. Aguilar, T. Agnew, G. Banks, A. Blake, L. Chessum, J. Dorning, S. Falcone, L. Goosey, S. Harris, A. Haynes, I. Heise, R. Hillier, T. Hough, A. Hoslin, M. Hutchison, R. King, S. Kumar, H.V. Lad, G. Law, R.E. MacLaren, S. Morse, T. Nicol, A. Parker, K. Pickford, S. Sethi, B. Starbuck, F. Stelma, M. Cheeseman, S.H. Cross, R.G. Foster, I.J. Jackson, S.N. Peirson, R.V. Thakker, T. Vincent, C. Scudamore, S. Wells, A. El-Amraoui, C. Petit, A. Acevedo-Arozena, P.M. Nolan, R. Cox, A.M. Mallon, S.D. Brown
Journal
Nat Commun
Year
2016
DOI
10.1038/ncomms12444
Pubmed ID
PMC4992138
Title
Analysis of mammalian gene function through broad-based phenotypic screens across a consortium of mouse clinics
Authors
M.H. de Angelis, G. Nicholson, M. Selloum, J.K. White, H. Morgan, R. Ramirez-Solis, T. Sorg, S. Wells, H. Fuchs, M. Fray, D.J. Adams, N.C. Adams, T. Adler, A. Aguilar-Pimentel, D. Ali-Hadji, G. Amann, P. Andre, S. Atkins, A. Auburtin, A. Ayadi, J. Becker, L. Becker, E. Bedu, R. Bekeredjian, M.C. Birling, A. Blake, J. Bottomley, M.R. Bowl, V. Brault, D.H. Busch, J.N. Bussell, J. Calzada-Wack, H. Cater, M.F. Champy, P. Charles, C. Chevalier, F. Chiani, G.F. Codner, R. Combe, R. Cox, E. Dalloneau, A. Dierich, A. Di Fenza, B. Doe, A. Duchon, O. Eickelberg, C. Esapa, E. Fertak, T. Feigel, I. Emelyanova, J. Estabel, J. Favor, A. Flenniken, A. Gambadoro, L. Garrett, H. Gates, A.K. Gerdin, G. Gkoutos, S. Greenaway, L. Glasl, P. Goetz, G. Da Cruz, P. Goetz, J. Graw, A. Guimond, W. Hans, G. Hicks, S.M. Holter, H. Hofler, J.M. Hancock, R. Hoehndorf, T. Hough, R. Houghton, A. Hurt, B. Ivandic, H. Jacobs, S. Jacquot, N. Jones, N.A. Karp, H.A. Katus, S. Kitchen, T. Klein-Rodewald, M. Klingenspor, T. Klopstock, V. Lalanne, S. Leblanc, C. Lengger, E. Le Marchand, T. Ludwig, A. Lux, C. McKerlie, H. Maier, J.L. Mandel, S. Marschall, M. Mark, D.G. Melvin, H. Meziane, K. Micklich, C. Mittelhauser, L. Monassier, others
Journal
Nat Commun
Year
2015
DOI
10.1038/ng.3360
Pubmed ID
PMC4992138
Title
INFRAFRONTIER–providing mutant mouse resources as research tools for the international scientific community
Authors
Journal
Nucleic Acids Res
Year
2015
DOI
10.1093/nar/gku1193
Pubmed ID
PMC4992138
Title
Applying the ARRIVE Guidelines to an In Vivo Database
Authors
N.A. Karp, T.F. Meehan, H. Morgan, J.C. Mason, A. Blake, N. Kurbatova, D. Smedley, J. Jacobsen, R.F. Mott, V. Iyer, P. Matthews, D.G. Melvin, S. Wells, A.M. Flenniken, H. Masuya, S. Wakana, J.K. White, K.C. Lloyd, C.L. Reynolds, R. Paylor, D.B. West, K.L. Svenson, E.J. Chesler, M.H. de Angelis, G.P. Tocchini-Valentini, T. Sorg, Y. Herault, H. Parkinson, A.M. Mallon, S.D. Brown
Journal
PLoS Biol
Year
2015
DOI
10.1371/journal.pbio.1002151
Pubmed ID
Pmc4439173
Title
PhenStat: A Tool Kit for Standardized Analysis of High Throughput Phenotypic Data
Authors
N. Kurbatova, J.C. Mason, H. Morgan, T.F. Meehan, N.A. Karp
Journal
PLoS One
Year
2015
DOI
10.1371/journal.pone.0131274
Pubmed ID
Pmc4493137
Title
Precision medicine: Look to the mice
Authors
K.C. Lloyd, T. Meehan, A. Beaudet, S. Murray, K. Svenson, C. McKerlie, D. West, I. Morse, H. Parkinson, S. Brown, A.M. Mallon, M. Moore
Journal
Science
Year
2015
DOI
10.1126/science.349.6246.390-a
Pubmed ID
Pmc4493137
Title
Introduction to Mammalian Genome special issue: Informatics and Integrative Genomics–Part 2
Authors
A.M. Mallon
Journal
Mamm Genome
Year
2015
DOI
10.1007/s00335-015-9604-9
Pubmed ID
Pmc4493137
Title
The Regulatory Factor ZFHX3 Modifies Circadian Function in SCN via an AT Motif-Driven Axis
Authors
M.J. Parsons, M. Brancaccio, S. Sethi, E.S. Maywood, R. Satija, J.K. Edwards, A. Jagannath, Y. Couch, M.J. Finelli, N.J. Smyllie, C. Esapa, R. Butler, A.R. Barnard, J.E. Chesham, S. Saito, G. Joynson, S. Wells, R.G. Foster, P.L. Oliver, M.M. Simon, A.M. Mallon, M.H. Hastings, P.M. Nolan
Journal
Cell
Year
2015
DOI
10.1016/j.cell.2015.06.060
Pubmed ID
Pmc4493137
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